| Main sequences |
|---|
| ID | Name | Group | Sample Origin | Sample Source | Museum Accession | GenBank Accession |
|---|
| DiMa080c | rattus diardi (diardii clade) | diardii | Kuala Lumpur, Malaysia | SAM | ABTC64907 | EF186528 |
| DiMa126c | rattus diardi (diardii clade) | diardii | Kuala Lumpur, Malaysia | SAM | ABTC64906 | EF186524 |
| ExCI031c | exulans (exulans clade) | exulans | Aitutaki, Cook Islands | E M-S | - | EF186529 |
| ExCI032c | exulans (exulans clade) | exulans | Aitutaki, Cook Islands | E M-S | - | EF186530 |
| ExIn023c | exulans (exulans clade) | exulans | Cibodas Forest, Indonesia | SAM | ABTC48011 | EF186536 |
| ExPN024c | exulans (exulans clade) | exulans | Yuro, Papua New Guinea | SAM | ABTC43078 | EF186542 |
| ExSa029c | exulans (exulans clade) | exulans | Manua, Samoa | E M-S | - | EF186545 |
| ExSa030c | exulans (exulans clade) | exulans | Manua, Samoa | E M-S | - | EF186545 |
| ExTh026c | exulans (exulans clade) | exulans | Thailand | SAM | ABTC 8553 | EF186547 |
| FlHk045c | flavipectus (tanezumi clade) | tanezumi | Hong Kong, China | SAM | ABTC 8489 | EF186555 |
| FuAu056c | fuscipes assimilis (fuscipes clade) | fuscipes | Lismore, Australia | SAM | ABTC51715 | EF186550 |
| FuAu057c | fuscipes coracius (fuscipes clade) | fuscipes | Mt Windsor, Queensland, Australia | SAM | ABTC51727 | EF186551 |
| FuAu059c | fuscipes fuscipes (fuscipes clade) | fuscipes | 26k W Manjimup, Australia | SAM | ABTC 8615 | EF186553 |
| HoSu044c | hoffmanni (hoffmanni clade) | hoffmanni | Tangoa, Sulawesi, Indonesia | SAM | ABTC65754 | EF186556 |
| HoSu061c | hoffmanni (hoffmanni clade) | hoffmanni | Mt Nokilalaki, Sulawesi, Indonesia | SAM | ABTC65809 | EF186557 |
| KaSL063c | kandianus (diardii clade) | diardii | Sri Lanka | SAM | ABTC 8529 | EF186559 |
| LeAu069c | leucopus cooktownensis (leucopus clade) | leucopus | Mt Simons, 19mls S Cooktown Queensland, Australia | SAM | ABTC 8447 | EF186562 |
| LeAu071c | leucopus leucopus (leucopus clade) | leucopus | Rocky River Queensland, Australia | SAM | ABTC 8493 | EF186567 |
| LePN066c | leucopus (verecundus clade) | verecundus | Haia, Central Highland Province, Papua New Guinea | SAM | ABTC42808 | EF186564 |
| MoPN046c | mordax (PNG 1 clade) | PNG 1 | Nokopo, Morobe Province, Papua New Guinea | SAM | ABTC48962 | EF186568 |
| NiPN072c | niobe (PNG 1 clade) | PNG 1 | Bundi, Madang Province, Papua New Guinea | SAM | ABTC49306 | EF186571 |
| NiPN073c | niobe (PNG 2 clade) | PNG 2 | Magidobo, Southern Highland Province, Papua New Guinea | SAM | ABTC45409 | EF186572 |
| NiPN074c | niobe (PNG 2 clade) | PNG 2 | Mt Karimui, Central Highland Province, Papua New Guinea | SAM | ABTC43906 | EF186573 |
| NiPN075c | niobe (PNG 3 clade) | PNG 3 | near Kosipe Mt Albert Edward Central Province, Papua New Guinea | SAM | ABTC42503 | EF186574 |
| NiPN077c | niobe (PNG 3 clade) | PNG 3 | Sol River, West Sepik Province, Papua New Guinea | SAM | ABTC47145 | EF186575 |
| NoDe048c | norvegicus (norvegicus clade) | norvegicus | Copenhagen, Denmark | GenBank | - | AJ428514 |
| Noxx001c | norvegicus (norvegicus clade) | norvegicus | laboratory strain | GenBank | - | NC_001665 |
| PrPN123c | praetor (PNG 1 clade) | PNG 1 | Munbil, West Sepik Province, Papua New Guinea | SAM | ABTC47271 | EF186581 |
| PrPN124c | praetor (PNG 1 clade) | PNG 1 | Munbil, West Sepik Province, Papua New Guinea | SAM | ABTC47273 | EF186582 |
| RaNZ004c | rattus (rattus 1 clade) | rattus 1 | Titirangi, New Zealand | trapped | - | EF186585 |
| RaPN009c | rattus (rattus 2 clade) | rattus 2 | Moitaka, National Capital District, Papua New Guinea | SAM | ABTC44857 | EF186586 |
| RaPN010c | rattus (rattus 1 clade) | rattus 1 | Sideia Is., Milne Bay Province, Papua New Guinea | SAM | ABTC50177 | EF186587 |
| RaPN079c | rattus (rattus 2 clade) | rattus 2 | Moitaka, National Capital District, Papua New Guinea | SAM | ABTC44858 | EF186588 |
| RuPN055c | ruber (PNG 1 clade) | PNG 1 | Yuro, Central Highland Province, Papua New Guinea | SAM | ABTC43216 | EF186591 |
| SoAu087c | sordidus (sordidus clade) | sordidus | Ingham, Queensland, Australia | SAM | ABTC51664 | EF186593 |
| SoAu088c | sordidus (sordidus clade) | sordidus | Sir Edward Pellew Is. Northern Territory, Australia | SAM | ABTC41164 | EF186594 |
| StIn090c | steini (PNG 1 clade) | PNG 1 | Bogor Botanic Gardens, Java, Indonesia | SAM | ABTC44036 | EF186596 |
| StPN047c | steini (PNG 1 clade) | PNG 1 | Nokopo, MP, Papua New Guinea | SAM | ABTC49035 | EF186598 |
| TaIn018c | tanezumi (tanezumi clade) | tanezumi | Jakarta, Java, Indonesia | SAM | ABTC47993 | EF186606 |
| TaIn019c | tanezumi (tiomanicus clade) | tiomanicus | Jakarta, Java, Indonesia | SAM | ABTC47994 | EF186607 |
| TaIn022c | tanezumi (tanezumi clade) | tanezumi | Yogyakarta, Java, Indonesia | SAM | ABTC47983 | EF186610 |
| TaIn100c | tanezumi (diardii clade) | diardii | Jakarta, Java, Indonesia | SAM | ABTC47997 | EF186613 |
| TaIn103c | tanezumi (diardii clade) | diardii | Jakarta, Java, Indonesia | SAM | ABTC48000 | EF186616 |
| TaIn107c | tanezumi (tanezumi clade) | tanezumi | Yogyakarta, Java, Indonesia | SAM | ABTC47984 | EF186617 |
| TaJp014c | tanezumi (tanezumi clade) | tanezumi | Anami Island, Japan | SAM | ABTC 8487 | EF186623 |
| TaSu105c | tanezumi (diardii clade) | diardii | northern Sulawesi, Indonesia | SAM | ABTC48005 | EF186627 |
| TiIn050c | tiomanicus (tiomanicus clade) | tiomanicus | Cibodas forest, Java, Indonesia | SAM | ABTC48026 | EF186628 |
| TuAu114c | tunneyi (tunneyi clade) | tunneyi | Litchfield NP, Northern Territory, Australia | SAM | ABTC29636 | EF186630 |
| TuAu118c | tunneyi (tunneyi clade) | tunneyi | Yarraman, Queensland, Australia | SAM | ABTC51688 | EF186633 |
| VePN053c | verecundus (verecundus clade) | verecundus | Bobole, Southern Highland Province, Papua New Guinea | SAM | ABTC45161 | EF186634 |
| VePN119c | verecundus (PNG 3 clade) | PNG 3 | Bundi, Madang Province, Papua New Guinea | SAM | ABTC49292 | EF186635 |
| VePN120c | verecundus (verecundus clade) | verecundus | Noru, Central Highland Province, Papua New Guinea | SAM | ABTC43510 | EF186636 |
