DNA Surveillance

Species identification with DNA

Brazilian Parrots	Home	About	How to Use	The Science	Links and Publications	Data Ownership
Search	Cluster (Simple)	Cluster (Advanced)	Maximum Likelihood	Example Data

General details for dataset 'Amazona COI Clados Chaves identification (end)'

Loci: Cytochrome Oxidase sub.1 (end)

Domain: Amazona identification

Alignment: 11 sequences, 401 sites

Alignment scoring

-	A	C	G	T
A	1.0	-1.0	-1.0	-1.0
C	-1.0	1.0	-1.0	-1.0
G	-1.0	-1.0	1.0	-1.0
T	-1.0	-1.0	-1.0	1.0

Create/extend = -2.9/-0.7

Substitution model

-	A	C	G	T
A	-	1.0	1.0	1.0
C	1.0	-	1.0	1.0
G	1.0	1.0	-	1
T	1.0	1.0	1	-

(A,G,C,T) = (0.25, 0.25, 0.25, 0.25)

Sequence details

ID	Name	Group	GenBank
H2_A.ochro	H2 A.ochrocephala/aestiva clade2 SA	South America	?
H14_A.ochr	H14 A.ochrocephala/aestiva clade2 SA	South America	?
H1_A.ochro	H1 A.ochrocephala/aestiva clade1 SA	South America	?
H4_A.ochro	H4 A.ochrocephala/aestiva clade1 SA	South America	?
H23_A.o.pa	H23 A.o.panamensis CA	Central America	?
H27_A.o.au	H27 A.o.auropalliata CA	Central America	?
H25_A.o.tr	H25 A.o.tresmariae CA	Central America	?
H24_A.o.be	H24 A.o.belizensis CA	Central America	?
H26_A.o.or	H26 A.o.oratrix CA	Central America	?
H20_A.ochr	H20 A.ochrocephala NSA	North America	?
H21_A.ochr	H21 A.ochrocephala NSA	North America	?