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DNA Surveillance

Species identification with DNA
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Search Cluster (Simple) Cluster (Advanced) Maximum Likelihood Example Data

General details for dataset 'Amazona ND2 Clados Chaves identification'

Loci: NADH dehydrogenase subunit 2
Domain: Amazona identification
Alignment: 11 sequences, 502 sites
Alignment scoring
-ACGT
A1.0-1.0-1.0-1.0
C-1.01.0-1.0-1.0
G-1.0-1.01.0-1.0
T-1.0-1.0-1.01.0
Create/extend = -2.9/-0.7
Substitution model
-ACGT
A-1.01.01.0
C1.0-1.01.0
G1.01.0-1
T1.01.01-
(A,G,C,T) = (0.25, 0.25, 0.25, 0.25)

Sequence details

IDNameGroupGenBank
H24_A.o.or H24 A.o.oratrix CACentral America?
H31_A.o.be H31 A.o.belizensis CACentral America?
H1_clade1_ H1 clade1 SASouth America?
H9_clade1_ H9 clade1 SASouth America?
H5_clade2_ H5 clade2 SASouth America?
H17_Clade2 H17 Clade2 SASouth America?
H15_clade2 H15 clade2 SASouth America?
H21_A.ocho H21 A.ochocephala NSANorth America?
H20_A_o.pa H20 A o.panamensis CACentral America?
H30_A.o.au H30 A.o.auropalliata CACentral America?
H26_A.o.tr H26 A.o.tresmariae CACentral America?