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DNA Surveillance

Species identification with DNA
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Search Cluster (Simple) Cluster (Advanced) Maximum Likelihood Example Data

General details for dataset 'World Psittacidae CHAVES ND2'

Loci: NADH dehydrogenase subunit 2
Domain: World Psittacidae
Alignment: 178 sequences, 502 sites
Alignment scoring
-ACGT
A1.0-1.0-1.0-1.0
C-1.01.0-1.0-1.0
G-1.0-1.01.0-1.0
T-1.0-1.0-1.01.0
Create/extend = -2.9/-0.7
Substitution model
-ACGT
A-1.01.01.0
C1.0-1.01.0
G1.01.0-1
T1.01.01-
(A,G,C,T) = (0.25, 0.25, 0.25, 0.25)

Sequence details

IDNameGroupGenBank
H5_clade2_ H5 Clade2 SAAfrica?
H17_Clade2 H17 Clade2 SAAfrica?
H15_clade2 H15 Clade2 SAAfrica?
H9_clade1_ H9 Clade1 SAAfrica?
H1_clade1_ H1 Clade1 SAAfrica?
H21_A.ocho H21 A.ochrocephala NSAAfrica?
H24_A.o.or H24 A.o.oratrix CAAfrica?
H31_A.o.be H31 A.o.belizensis CAAfrica?
H30_A.o.au H30 A.o.auropalliata CAAfrica?
H26_A.o.tr H26 A.o.tresmariae CAAfrica?
H20_A_o.pa H20 A.o.panamensis CAAfrica?
171705416 Platycercus elegansUnspecified 171705416
171705364 Platycercus elegansUnspecified 171705364
171705448 Platycercus caledonicusUnspecified 171705448
171705520 Platycercus venustusUnspecified 171705520
169787742 Platycercus adscitusUnspecified 169787742
171705506 Platycercus icterotisUnspecified 171705506
171705504 Platycercus icterotisUnspecified 171705504
171705532 Purpureicephalus spuriusUnspecified 171705532
171705528 Psephotus dissimilisUnspecified 171705528
399893809 Psephotus chrysopterygiusUnspecified 399893809
171705530 Psephotus variusUnspecified 171705530
169787754 Psephotus variusUnspecified 169787754
70955095 Barnardius zonariusUnspecified 70955095
70955195 Barnardius zonariusUnspecified 70955195
399893807 Psephotus haematonotusUnspecified 399893807
399893803 Northiella haematogasterUnspecified 399893803
169787724 Northiella haematogasterUnspecified 169787724
354992351 Eunymphicus cornutusUnspecified 354992351
169787686 Eunymphicus uvaeensisUnspecified 169787686
399893795 Eunymphicus uvaeensisUnspecified 399893795
334866586 Cyanoramphus novaezelandiaeUnspecified 334866586
169787670 Cyanoramphus auricepsUnspecified 169787670
334866588 Lathamus discolorUnspecified 334866588
169787752 Prosopeia tabuensisUnspecified 169787752
354992323 Agapornis canusUnspecified 354992323
169787632 Agapornis roseicollisUnspecified 169787632
33622155 Neophema elegansUnspecified 33622155
399893799 Neophema chrysostomaUnspecified 399893799
354992363 Neophema pulchellaUnspecified 354992363
354992349 Eos histrioUnspecified 354992349
169787684 Eos reticulataUnspecified 169787684
169787654 Chalcopsitta duivenbodeiUnspecified 169787654
354992345 Chalcopsitta cardinalisUnspecified 354992345
354992377 Psitteuteles goldieiUnspecified 354992377
169787756 Pseudeos fuscataUnspecified 169787756
169787744 Poicephalus robustusUnspecified 169787744
169787720 Neopsittacus musschenbroekiiUnspecified 169787720
169787760 Psittaculirostris edwardsiiUnspecified 169787760
169787672 Cyclopsitta diophthalmaUnspecified 169787672
169787706 Melopsittacus undulatusUnspecified 169787706
354992373 Psittacula krameriUnspecified 354992373
169787758 Psittacula columboidesUnspecified 169787758
169787776 Tanygnathus lucionensisUnspecified 169787776
169787692 Geoffroyus heteroclitusUnspecified 169787692
354992379 Psittinus cyanurusUnspecified 354992379
169787678 Eclectus roratusUnspecified 169787678
354992375 Psittacula roseataUnspecified 354992375
354992361 Micropsitta pusioUnspecified 354992361
169787708 Micropsitta finschiiUnspecified 169787708
171705524 Polytelis anthopeplusUnspecified 171705524
169787638 Aprosmictus erythropterusUnspecified 169787638
169787634 Alisterus amboinensisUnspecified 169787634
169787746 Polytelis alexandraeUnspecified 169787746
354992369 Prioniturus montanusUnspecified 354992369
169787748 Prioniturus luconensisUnspecified 169787748
354992343 Callocephalon fimbriatumUnspecified 354992343
330686672 Callocephalon fimbriatumUnspecified 330686672
169787774 Strigops habroptilusUnspecified 169787774
169787722 Nestor notabilisUnspecified 169787722
169787702 Loriculus galgulusUnspecified 169787702
354992355 Loriculus philippensisUnspecified 354992355
169787664 Coracopsis vasaUnspecified 169787664
334866606 Psittacella pictaUnspecified 334866606
334866604 Psittacella brehmiiUnspecified 334866604
169787764 Psittrichas fulgidusUnspecified 169787764
334866594 Pezoporus wallicusUnspecified 334866594
334866590 Pezoporus wallicus flaviventrisUnspecified 334866590
334866592 Pezoporus occidentalisUnspecified 334866592
169787646 Bolbopsittacus lunulatusUnspecified 169787646
169787718 Neopsephotus bourkiiUnspecified 169787718
169787762 Psittacus erithacusUnspecified 169787762
354992367 Poicephalus senegalusUnspecified 354992367
354992353 Forpus modestus sclateriUnspecified 354992353
302201549 Forpus modestusUnspecified 302201549
169787690 Forpus passerinusUnspecified 169787690
56387518 Anodorhynchus leariUnspecified 56387518
320526249 Anodorhynchus hyacinthinusUnspecified 320526249
169787696 Guaruba guaroubaUnspecified 169787696
169787676 Diopsittaca nobilisUnspecified 169787676
169787700 Leptosittaca branickiiUnspecified 169787700
169787666 Cyanoliseus patagonusUnspecified 169787666
33622159 Nandayus nendayUnspecified 33622159
320526271 Aratinga solstitialisUnspecified 320526271
320526255 Aratinga auricapillusUnspecified 320526255
56387516 Aratinga weddelliiUnspecified 56387516
354992335 Ara araraunaUnspecified 354992335
320526251 Ara glaucogularisUnspecified 320526251
169787642 Ara macaoUnspecified 169787642
169787728 Orthopsittaca manilataUnspecified 169787728
169787668 Cyanopsitta spixiiUnspecified 169787668
320526261 Aratinga finschiUnspecified 320526261
320526273 Aratinga wagleriUnspecified 320526273
320526267 Aratinga mitrataUnspecified 320526267
320526259 Aratinga euopsUnspecified 320526259
320526257 Aratinga chloropteraUnspecified 320526257
320526265 Aratinga leucophthalmaUnspecified 320526265
226876702 Aratinga nanaUnspecified 226876702
320526253 Aratinga aureaUnspecified 320526253
169787640 Aratinga pertinaxUnspecified 169787640
354992331 Aratinga canicularisUnspecified 354992331
56387514 Pyrrhura pictaUnspecified 56387514
169787768 Pyrrhura pictaUnspecified 169787768
357063480 Pyrrhura frontalisUnspecified 357063480
320526293 Pyrrhura perlataUnspecified 320526293
354992381 Pyrrhura albipectusUnspecified 354992381
354992383 Pyrrhura hoffmanniUnspecified 354992383
169787770 Rhynchopsitta pachyrhynchaUnspecified 169787770
169787736 Pionites melanocephalusUnspecified 169787736
169787674 Deroptyus accipitrinusUnspecified 169787674
169787680 Enicognathus leptorhynchusUnspecified 169787680
56387600 Hapalopsittaca amazoninaUnspecified 56387600
169787698 Hapalopsittaca amazoninaUnspecified 169787698
320526285 Hapalopsittaca melanotisUnspecified 320526285
56387578 Gypopsitta haematotisUnspecified 56387578
56387574 Gypopsitta coccinicollarisUnspecified 56387574
56387572 Gypopsitta coccinicollarisUnspecified 56387572
56387568 Gypopsitta pulchraUnspecified 56387568
56387564 Gypopsitta pyriliaUnspecified 56387564
56387560 Pionopsitta barrabandiUnspecified 56387560
383874549 Pionopsitta caicaUnspecified 383874549
56387552 Pionopsitta caicaUnspecified 56387552
320526287 Pionopsitta vulturinaUnspecified 320526287
56387534 Pionopsitta vulturinaUnspecified 56387534
56387524 Gypopsitta aurantiocephalaUnspecified 56387524
56387526 Gypopsitta aurantiocephalaUnspecified 56387526
56387592 Graydidascalus brachyurusUnspecified 56387592
56387522 Pionus fuscusUnspecified 56387522
154371694 Pionus fuscusUnspecified 154371694
154371688 Pionus sordidusUnspecified 154371688
154371684 Pionus sordidus anteliusUnspecified 154371684
154371682 Pionus sordidus saturatusUnspecified 154371682
154371678 Pionus sordidus corallinusUnspecified 154371678
154371674 Pionus maximiliani lacerusUnspecified 154371674
154371666 Pionus maximilianiUnspecified 154371666
154371630 Pionus menstruusUnspecified 154371630
154371626 Pionus menstruusUnspecified 154371626
154371636 Pionus menstruus rubrigularisUnspecified 154371636
154371646 Pionus menstruus reichenowiUnspecified 154371646
154371648 Pionus menstruus reichenowiUnspecified 154371648
354992365 Pionus chalcopterusUnspecified 354992365
154371664 Pionus chalcopterusUnspecified 154371664
154371656 Pionus senilisUnspecified 154371656
154371658 Pionus senilisUnspecified 154371658
154371652 Pionus tumultuosus seniloidesUnspecified 154371652
154371650 Pionus tumultuosusUnspecified 154371650
257786415 Brotogeris cyanopteraUnspecified 257786415
257786431 Brotogeris cyanopteraUnspecified 257786431
257786439 Brotogeris chrysopteraUnspecified 257786439
257786461 Brotogeris chrysopteraUnspecified 257786461
257786403 Brotogeris pyrrhopterusUnspecified 257786403
257786491 Brotogeris jugularisUnspecified 257786491
257786497 Brotogeris jugularisUnspecified 257786497
257786399 Brotogeris chiririUnspecified 257786399
257786397 Brotogeris chiririUnspecified 257786397
257786389 Brotogeris versicolurusUnspecified 257786389
257786391 Brotogeris versicolurusUnspecified 257786391
320526277 Brotogeris versicolurus 320526277Unspecified?
257786477 Brotogeris sanctithomaeUnspecified 257786477
257786483 Brotogeris sanctithomaeUnspecified 257786483
257786379 Brotogeris tiricaUnspecified 257786379
169787710 Myiopsitta monachusUnspecified 169787710
56387586 Pionopsitta pileataUnspecified 56387586
354992385 Touit purpuratusUnspecified 354992385
169787780 Touit batavicusUnspecified 169787780
320526275 Bolborhynchus lineolaUnspecified 320526275
169787714 Nannopsittaca panychloraUnspecified 169787714
354992371 Bolborhynchus aymaraUnspecified 354992371