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DNA Surveillance

Species identification with DNA
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Search Cluster (Simple) Cluster (Advanced) Maximum Likelihood Example Data

General details for dataset 'All Amazona ND2 e CHAVES'

Loci: NADH dehydrogenase subunit 2
Domain: All Amazona species + (Chaves et al.)
Alignment: 16 sequences, 502 sites
Alignment scoring
-ACGT
A1.0-1.0-1.0-1.0
C-1.01.0-1.0-1.0
G-1.0-1.01.0-1.0
T-1.0-1.0-1.01.0
Create/extend = -2.9/-0.7
Substitution model
-ACGT
A-1.01.01.0
C1.0-1.01.0
G1.01.0-1
T1.01.01-
(A,G,C,T) = (0.25, 0.25, 0.25, 0.25)

Sequence details

IDNameGroupGenBank
H15_clade2 H15_clade2_SASouth America?
H5_clade2_ H5_clade2_SASouth America?
H17_Clade2 H17_Clade2_SASouth America?
H9_clade1_ H9_clade1_SASouth America?
H1_clade1_ H1_clade1_SASouth America?
H21_A.ocho H21_A.ochocephala_NSANorth America?
H24_A.o.or H24_A.o.oratrix_CACentral America?
H31_A.o.be H31_A.o.belizensis_CACentral America?
H30_A.o.au H30_A.o.auropalliata_CACentral America?
H26_A.o.tr H26_A.o.tresmariae_CACentral America?
H20_A_o.pa H20_A_o.panamensis_CACentral America?
169787636 Amazona viridigenalisUnspecified 169787636
37780926 Amazona autumnalisUnspecified 37780926
37780956 Amazona farinosaUnspecified 37780956
37780966 Amazona amazonicaUnspecified 37780966
320526245 Amazona festivaUnspecified 320526245